Difference between revisions of "PhDSupervision:Dhananjay Ipparthi"

Latest revision as of 09:59, 18 May 2017

Personal Information

Name: Dhananjay Ipparthi

Date of arrival in Brussels: 08th February, 2012

Home address: Rue des Vierges 58, 1000 Bruxelles

WhatsApp number: +32 483 382 207

Telephone number: +32 479 406 747

Milestones

Three papers
Thesis
- Table of contents

Project pages

Study of yield predictions of a self-assembling system - extended

Conformational Switching

Dynamics of self-assembly

Dipole words

Parallel self-assembling systems review paper

Papers in progress

Updated March 2, 2017

Yield Predictions for a Model of Homogeneous Parallel Aggregation
- Authors: Dhananjay Ipparthi, Andrew Winslow, Metin Sitti, Marco Dorigo, Massimo Mastrangeli.
- Target journal: Soft Matter
- Synopsis: Statistics to compare model and physical experiments.
- Project page: Theory of incompatible substructure problem
- Forecast submission: March 15, 2017

Velocities of 2D constrained orbitally shaken particles are Rayleigh distributed
- Authors: Dhananjay Ipparthi, Tijmen Hageman, Nicolas Cambier, Metin Sitti, Marco Dorigo, Leon Abelmann and Massimo Mastrangeli
- Target journal: Advanced Physics Letters
- Synopsis: Experimental evidence that velocities of components constrained in 2D that are orbitally shaken are Rayleigh distributed
- Project page: Dynamics of self-assembly
- Draft to Massimo: March 7th, 2017
- Forecast submission: May 10th, 2017

1, 2 and 3 order Chi-distribution
- Authors: Tijmen Hageman, Dhananjay Ipparthi, Marc Pichel, Per Arvid Loethman, Marco Dorigo, Massimo Mastrangeli and Leon Abelmann
- Target journal: TBD
- Synopsis: The velocity distribution of 1 particle shaken in 1D, 2D and 3D are respectively Gaussian, Rayleigh and Maxwell-Boltzman distributed. That is, their velocity distributions are nth order of Chi.
- Forecast submission: April 30, 2017

Solutions to the incompatible substructures problem in macroscale systems
- Authors: Dhananjay Ipparthi, Andrew Winslow, Massimo Mastrangeli and Marco Dorigo
- Target journal:
- Synopsis: Presentation of the different approaches to the incompatible substurcture problem: modifying geometry, modifying bonding rules, conformational switching, high inertia particles, partitioning the container and self-assembly.
- Project pages: Conformational Switching, Use of a external agent to break incompatible substructures
- Missing: Conformational switching design still not working
- Forecast submission: July 31, 2017 (it will include parts of PPSN 2015 paper and parts of Theoretical Computer Science 2015 paper)

Review of macroscale parallel self-assembling systems - Not sure it will be done
- Authors: Dhananjay Ipparthi, Massimo Mastrangeli and Marco Dorigo
- Target journal: Micromachines: Special Issue on Building by Self-Assembly
- Synopsis: An in-depth review of macroscale parallel self-assembling systems. Summaries, categorisations and differentiations of the various works till date. Provide open problems.
- Project page: Parallel self-assembling systems review paper

Academic Activities

Things I'm taking to MPI

Year 5: Feb 2016 - Feb 2017

Year 4: Feb 2015 - Feb 2016

Year 3: Feb 2014 - Feb 2015

Year 2: Feb 2013 - Feb 2014

Year 1: Feb 2012 - Feb 2013

@@ Line 8: / Line 8: @@
 Home address: Rue des Vierges 58, 1000 Bruxelles
-Telephone number: +32 483 382 207
+WhatsApp number: +32 483 382 207
+Telephone number: +32 479 406 747
 == Milestones ==
+* Three papers
+* Thesis
+** [http://iridia.ulb.ac.be/wiki/PhDSupervision:Dhananjay_Ipparthi/Table_of_contents Table of contents]
+== Project pages ==
-Advanced Studies Thesis due in April 2013
-FNRS scholarship proposal due in January 2013
-Self Reproduction Review Paper due in October 2012
+=== [[Study of yield predictions of a self-assembling system - extended]] ===
-== Academic Activities ==
+=== [[Conformational Switching]] ===
-=== 31st August, 2012 ===
+=== [[Dynamics of self-assembly]] ===
+=== [[Dipole words]] ===
-'''Literature Review'''
+=== [[Parallel self-assembling systems review paper]] ===
-* Evolvable Physical Self-Replicators, Virgo 2012
-* Some alternative reproductive strategies in artificial molecular machines, Laing 1975
-'''Project Work'''
-* Work on Self-Reproduction Review Paper
-'''Development'''
+== Papers in progress ==
-''' Laboratory Activities'''
+Updated March 2, 2017
-* Assist Gianpiero in procuring cabinets for robots in the arena
+* <b>Yield Predictions for a Model of Homogeneous Parallel Aggregation</b>
-'''Ideas'''
+** Authors: Dhananjay Ipparthi, Andrew Winslow, Metin Sitti, Marco Dorigo, Massimo Mastrangeli.
+** Target journal: Soft Matter
+** Synopsis: Statistics to compare model and physical experiments.
+** Project page:  [[Theory of incompatible substructure problem]]
+** Forecast submission: March 15, 2017
+* <b>Velocities of 2D constrained orbitally shaken particles are Rayleigh distributed</b>
-'''Deliverable'''
+** Authors: Dhananjay Ipparthi, Tijmen Hageman, Nicolas Cambier, Metin Sitti, Marco Dorigo, Leon Abelmann and Massimo Mastrangeli
-Advanced Studies Thesis due in April 2013
+** Target journal: Advanced Physics Letters
+** Synopsis: Experimental evidence that velocities of components constrained in 2D that are orbitally shaken are Rayleigh distributed
+** Project page: [[Dynamics of self-assembly]]
+** Draft to Massimo: March 7th, 2017
+** Forecast submission: May 10th, 2017
+* <b>1, 2 and 3 order Chi-distribution </b>
-=== 17th August, 2012 ===
+** Authors: Tijmen Hageman, Dhananjay Ipparthi, Marc Pichel, Per Arvid Loethman, Marco Dorigo, Massimo Mastrangeli and Leon Abelmann
-'''Literature Review'''
+** Target journal: TBD
-* Self-reproduction in cellular automata, Langton 1984
+** Synopsis: The velocity distribution of 1 particle shaken in 1D, 2D and 3D are respectively Gaussian, Rayleigh and Maxwell-Boltzman distributed. That is, their velocity distributions are nth order of Chi.
-* Formal definition of self-reproductive systems. Luskha 2003
+** Forecast submission: April 30, 2017
-'''Project Work'''
-* Work on Self-Reproduction Review Paper
-'''Development'''
-* Staged self-assembly simulation. Development of a self-assembly modeller in the ARGoS framework.
-** Tuning of parameters
-''' Laboratory Activities'''
-* Assist Gianpiero in procuring cabinets for robots in the arena
-'''Ideas'''
+* <b>Solutions to the incompatible substructures problem in macroscale systems</b>
-'''Deliverable'''
+** Authors: Dhananjay Ipparthi, Andrew Winslow, Massimo Mastrangeli and Marco Dorigo
-FNRS scholarship proposal due in January 2013
+** Target journal:
+** Synopsis: Presentation of the different approaches to the incompatible substurcture problem: modifying geometry, modifying bonding rules, conformational switching, high inertia particles, partitioning the container and self-assembly.
+** Project pages: [[Conformational Switching]], [[Use of a external agent to break incompatible substructures]]
+** Missing: Conformational switching design still not working
+** Forecast submission: July 31, 2017 (it will include parts of PPSN 2015 paper and parts of Theoretical Computer Science 2015 paper)
+* <b>Review of macroscale parallel self-assembling systems</b> - Not sure it will be done
-=== 29th June, 2012 ===
+** Authors: Dhananjay Ipparthi, Massimo Mastrangeli and Marco Dorigo
-'''Literature Review'''
+** Target journal: ''Micromachines: Special Issue on Building by Self-Assembly''
-* Compiling reading list for Self-Reproduction Review Paper
+** Synopsis: An in-depth review of macroscale parallel self-assembling systems. Summaries, categorisations and differentiations of the various works till date. Provide open problems.
-'''Project Work'''
+** Project page: [[Parallel self-assembling systems review paper]]
-* Drew skeleton for Self-Reproduction Review Paper
-'''Development'''
-* Staged self-assembly simulation. Development of a self-assembly modeller in the ARGoS framework.
-** Tile integration rules introduced
-''' Laboratory Activities'''
-* Assist Gianpiero in procuring cabinets for robots in the arena
-'''Ideas'''
+== Academic Activities ==
-'''Deliverable'''
-=== 04th June, 2012 ===
-'''Literature Review'''
-* Self-Reproduction related papers
-'''Project Work'''
-* Drew skeleton for Self-Reproduction Review Paper
-'''Development'''
-* Staged self-assembly simulation. Development of a self-assembly modeller in the ARGoS framework.
-** Tile instance created and fundamental functions set up.
-''' Laboratory Activities'''
-* Assist Gianpiero in procuring cabinets for robots in the arena
-'''Ideas'''
-* Include different magnetic patterns on the tiles to examine how they will be developed
-'''Deliverable'''
-Self Reproduction Review Paper [due October, first draft end of July(?)]
-=== 14th May, 2012 ===
-'''Literature Review'''
-# Bhalla, Bentley. Staging the Self-Assembly Process: Inspiration from Biological Development [Manuscript]
-'''Project Work'''
-* Initial designs of Staged Self-Assembly
-* Prepare presentation of literature review [completed]
-'''Development'''
-* Staged self-assembly simulation
-''' Laboratory Activities'''
-* Assist Gianpiero in drawing designs for cabinets for robots in the arena
-* Assist Touraj in setting up the Kilo-bots
-'''Ideas'''
-'''Deliverable'''
-Present an introduction to Self-Reproduction
-=== 30th Apr, 2012 ===
-'''Literature Review'''
-# Stephen Wolfram. New Kind of Science. [Chapters: 1 and 3]
-# Pesavento, Umberto. An implementation of von Neumann's self-reproducing machine
-# Zykov, Mytilinaios, Adams, Lipson. Self-reproducing machines.
-'''Project Work'''
-* Prepare presentation of literature review [80% completed]
-'''Development'''
-* Staged self-assembly review
-''' Laboratory Activities'''
-* Assist Gianpiero in procurement of robot storage cabinets for the Arena
-'''Ideas'''
-* Hand drawn sketch of 3D gear as an idea of machines capable of climbing one another in order to create a smart bridge over a gap.
-* Replication inspired by DNA strands and Genetic operations
-'''Deliverable'''
-Present an introduction to Self-Reproduction early in May 2012
-=== 26th March, 2012 ===
-'''Literature Review'''
-# Freitas and Merkle. Kinematic self-replicating machines. [Chapters: 1 and 2]
-# Sipper. Book review of Kinematic self-replicating machines.
-# Penrose and Penrose. A self-reproducing analogue. Nature.
-# Penrose. Self-reproducing machines. Scientific American.
-# Bhalla. Designing self-assembling systems via physically encoded information. PhD thesis. [Chapters: 1 and 2]
-'''Project Work'''
-* Collect available videos and links of self assembling systems
-* Prepare presentation of literature review
-'''Development'''
-* Extension of mini project: Add features to the virtual arena and make the robtos find them
-''' Laboratory Activities'''
-* Testing of robots brought back from Lausanne
-* Testing new kernel:
-** Connects more reliably to the wifi
-** Hangs during operation of Nithin's script 'swarmorph'
-'''Ideas'''
-* Baseline problem for robots to solve: crossing a bridge
-* 3D gear like entity which can create structures
-'''Deliverable'''
-Present an introduction to Self-Reproduction early in May 2012
-=== 15th February, 2012 ===
+=== [[Things I'm taking to MPI]] ===
-'''Literature Review'''
-[[Image:Review_20120215.pdfâ€Ž]]
+=== [[Year 5: Feb 2016 - Feb 2017]] ===
-'''Development'''
+=== [[Year 4: Feb 2015 - Feb 2016]] ===
-* Carlo has given me a mini project to work on to get me started on Argos. I am working on it.
+=== [[Year 3: Feb 2014 - Feb 2015]] ===
-''' Laboratory Activities'''
+=== [[Year 2: Feb 2013 - Feb 2014]] ===
-* In the afternoon on Monday, I will take a look at the Footbots with Arne.
+=== [[Year 1: Feb 2012 - Feb 2013]] ===
-* Alessandro and I have developed a rough plan for the setup of the camera network, we plan to start the execution this week.
-* Nithin and I have also initiated talks, and he wants to finalise a few issues before we continue.
-'''Ideas'''
-* Using nuclear fission or fusion models to create multiple agents, but the concern is that these models are unlike biological evolved systems  and are not adaptive, versatile or agile.
-* Study the evolution of dicarboxylic acids