Difference between revisions of "Theory of incompatible substructure problem"

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== Schedule ==
 
== Schedule ==
* 1st December, 2014 : Submit final draft of Conformational Switching paper to Marco
+
* 19th December, 2014 : Submit final draft of incompatible substructure paper to Marco
* 22nd November, 2014 : Finish first draft of Conformational Switching paper
+
* 30th November, 2014 : Finish results, create plots
* 8th November, 2014 : Finalise results, create plots
 
* 1st November, 2014 : Finalise plan for experiments and collect preliminary data
 
   
 
== Todo ==
 
== Todo ==
  +
* Outline by 8th November
 
  +
== Parameters ==
* Mount existing container on shaker
 
  +
* Components
  +
** Radius of each component: 25 mm
  +
** Thickness of each component: '''8 mm'''
  +
** Radius of magnet: 1.5 mm
  +
** Strength of magnet: N48
  +
** Polyamide
  +
  +
* Container
  +
** Radius of container: 125 mm
  +
** Depth of container: 9 mm
  +
** Material: Acrylic
  +
  +
* Shaker
  +
** Mode: Orbital shaking
  +
** Speed: 300 rpm
  +
** Duration for shaking: until stable structures are formed
   
 
== Experiments ==
 
== Experiments ==
 
* Assembly of 1 target structure
* Self-assembly experiment at different speeds:
 
  +
* Assembly of 2 target structures
** Result: self-assembly time distribution for each speed; use in experiments speed with lowest average time to completion + 2 std. dev.
 
* 2 target structure
+
* Assembly of 3 target structures
* 3 target structure
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* Assembly of 4 target structures
* 4 target structure
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* Assembly of 5 target structures
* 5 target structure
 
   
 
=== Particulars of experiments (10 trials each) ===
 
=== Particulars of experiments (10 trials each) ===

Revision as of 16:28, 25 November 2014

Schedule

  • 19th December, 2014 : Submit final draft of incompatible substructure paper to Marco
  • 30th November, 2014 : Finish results, create plots

Todo

Parameters

  • Components
    • Radius of each component: 25 mm
    • Thickness of each component: 8 mm
    • Radius of magnet: 1.5 mm
    • Strength of magnet: N48
    • Polyamide
  • Container
    • Radius of container: 125 mm
    • Depth of container: 9 mm
    • Material: Acrylic
  • Shaker
    • Mode: Orbital shaking
    • Speed: 300 rpm
    • Duration for shaking: until stable structures are formed

Experiments

  • Assembly of 1 target structure
  • Assembly of 2 target structures
  • Assembly of 3 target structures
  • Assembly of 4 target structures
  • Assembly of 5 target structures

Particulars of experiments (10 trials each)

  • Photos of initial condition and final condition
  • Self-assembly experiment at different speeds:
    • Run each experiment till self-assembly of one, two, three and four target structures
    • Use different speeds starting from lowest speed (= when components start to move) and increment speed by 25 rpm till target structure breaks.
  • Assembly of one target structure (Data to be collected: number of individual components, number of compatible substructures, number of incompatible substructures, number of targets)
  • Results to show
    • Result 1
    • Result 2
    • Result 3
    • Result 4


Meeting minutes