Difference between revisions of "Theory of incompatible substructure problem"

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== Schedule ==
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Stuff will be added here.
  
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* 1st December, 2014 : Submit final draft of Conformational Switching paper to Marco
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* 22nd November, 2014 : Finish first draft of Conformational Switching paper
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* 8th November, 2014 : Finalise results, create plots
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* 1st November, 2014 : Finalise plan for experiments and collect preliminary data
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== Todo ==
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* Outline by 8th November
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* Mount existing container on shaker
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== Experiments ==
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* Self-assembly experiment at different speeds:
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** Result: self-assembly time distribution for each speed; use in experiments speed with lowest average time to completion + 2 std. dev.
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* 2 target structure
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* 3 target structure
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* 4 target structure
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* 5 target structure
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=== Particulars of experiments (10 trials each) ===
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* Photos of initial condition and final condition
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* Self-assembly experiment at different speeds:
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** Run each experiment till self-assembly of one, two, three and four target structures
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** Use different speeds starting from lowest speed (= when components start to move) and increment speed by 25 rpm till target structure breaks.
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* Assembly of one target structure (Data to be collected: number of individual components, number of compatible substructures, number of incompatible substructures, number of targets)
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* Results to show
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** Result 1
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** Result 2
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** Result 3
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** Result 4
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== Meeting minutes ==

Revision as of 17:31, 22 November 2014

Schedule

  • 1st December, 2014 : Submit final draft of Conformational Switching paper to Marco
  • 22nd November, 2014 : Finish first draft of Conformational Switching paper
  • 8th November, 2014 : Finalise results, create plots
  • 1st November, 2014 : Finalise plan for experiments and collect preliminary data

Todo

  • Outline by 8th November
  • Mount existing container on shaker

Experiments

  • Self-assembly experiment at different speeds:
    • Result: self-assembly time distribution for each speed; use in experiments speed with lowest average time to completion + 2 std. dev.
  • 2 target structure
  • 3 target structure
  • 4 target structure
  • 5 target structure

Particulars of experiments (10 trials each)

  • Photos of initial condition and final condition
  • Self-assembly experiment at different speeds:
    • Run each experiment till self-assembly of one, two, three and four target structures
    • Use different speeds starting from lowest speed (= when components start to move) and increment speed by 25 rpm till target structure breaks.
  • Assembly of one target structure (Data to be collected: number of individual components, number of compatible substructures, number of incompatible substructures, number of targets)
  • Results to show
    • Result 1
    • Result 2
    • Result 3
    • Result 4


Meeting minutes

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