Difference between revisions of "Plan Max Manfrin"
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= Plan (future work) = |
= Plan (future work) = |
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+ | == Milestone I: Jan - Mar 2006== |
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− | '''Parallelization of ACO algorithms''' |
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− | '''Milestone I''': Jan - Mar 2006 |
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* Acquire practical experience in explicit parallelization on ACO algorithms |
* Acquire practical experience in explicit parallelization on ACO algorithms |
||
** Start from sequential ACOTSP and implement various MPI variants |
** Start from sequential ACOTSP and implement various MPI variants |
||
*** Sync |
*** Sync |
||
− | **** Multicolony - |
+ | **** Multicolony - fully-connected |
− | ***** |
+ | ***** colony 0 identifies the best colony; best colony broadcast its bsf solution |
− | ***** the colony |
+ | ***** colony 0 identifies the best colony and the worst colony; best colony send its bsf solution to worst colony |
**** Multicolony - ring |
**** Multicolony - ring |
||
+ | ***** unidirectional ring |
||
**** Multicolony - hypercube |
**** Multicolony - hypercube |
||
+ | ***** 3D hypercube |
||
**** Single colony, multi local search |
**** Single colony, multi local search |
||
*** Async |
*** Async |
||
**** Multicolony - completly-connected |
**** Multicolony - completly-connected |
||
− | ***** |
+ | ***** colony 0 identifies the best colony; best colony broadcast its bsf solution |
− | ***** the colony |
+ | ***** colony 0 identifies the best colony and the worst colony; best colony send its bsf solution to worst colony |
**** Multicolony - ring |
**** Multicolony - ring |
||
+ | ***** unidirectional ring |
||
**** Multicolony - hypercube |
**** Multicolony - hypercube |
||
+ | ***** 3D hypercube |
||
− | **** Single colony, multi local search |
||
* Paper submission to ANTS 2006 of "explicit parallelization of ACOTSP" |
* Paper submission to ANTS 2006 of "explicit parallelization of ACOTSP" |
||
* By end of March decision if and how to extend the paper for possible Journal article |
* By end of March decision if and how to extend the paper for possible Journal article |
||
* By end of March decision if proceed with MPI version of ILK-H + ACOTSP |
* By end of March decision if proceed with MPI version of ILK-H + ACOTSP |
||
− | * |
+ | * Find the sentence that explain what the PhD thesis is about (what is the contribution of this thesis?) |
** 1. Parallelization of ACO on multi-core architectures ? |
** 1. Parallelization of ACO on multi-core architectures ? |
||
** 2. Parallelization of ACO on collection of interesting problems? |
** 2. Parallelization of ACO on collection of interesting problems? |
||
− | + | ==Milestone II: Apr - Jun 2006== |
|
− | * ? Evolve practical experience in explicit parallelization on ACO algorithms |
||
− | ** ? Start from sequential ILK-H and parallelize it with MPI, calling it within parallel ACOTSP |
||
− | * Acquire practical experience in implicit parallelization on ACO algorithms |
||
− | ** Start from sequential ACOTSP and implement various OpenMP variants |
||
− | *** Sync ( i.e. implicit barrier in for directives) |
||
− | *** Async (i.e use of the nowait clause) |
||
− | * Paper on "implicit vs explicit parallelization of ACOTSP" |
||
− | * ? Paper on "hybridization of parallel ACOTSP and ILK-H" |
||
+ | * Development and empirical test of different communication schemes among colonies |
||
− | '''Milestone III''': Jul - Sep 2006 |
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+ | <pre> |
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+ | The i.a.k identify how often we do communication among colonies. |
||
+ | |||
+ | The law used to generate the periods is SQRT[(10)^(i+1)], so |
||
+ | i = 1 --> T = 10 |
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+ | i = 2 --> T = 31 |
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+ | i = 3 --> T = 100 |
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+ | i = 4 --> T = 316 |
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+ | i = 5 --> T = 1000 |
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+ | i = 6 --> T = 3162 |
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+ | i = 7 --> T = 10000 |
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+ | i = 8 --> T = 31622 |
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+ | i = 9 --> T = 100000 |
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+ | |||
+ | The jth exchange happens at iteration |
||
+ | |||
+ | |||
+ | T * (1 - 0.a^j)/(1 - 0.a) IF (int)[x_j - x_(j-1)] > k |
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+ | x_j = |
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+ | k OTHERWISE |
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+ | </pre> |
||
+ | * Start from sequential ACOTSP and implement various MPI variants |
||
+ | ** Sync |
||
+ | *** Multicolony - ring |
||
+ | **** unidirectional ring |
||
+ | ***** 4.8.10 |
||
+ | ***** 4.9.10 |
||
+ | ***** 5.8.10 |
||
+ | ***** 5.9.10 |
||
+ | ***** 6.8.10 |
||
+ | ***** 6.9.10 |
||
+ | ***** 7.6.10 |
||
+ | ***** 7.7.10 |
||
* Transfer the knowledge and experience on TSP to other problems |
* Transfer the knowledge and experience on TSP to other problems |
||
− | ** Identify possible problems for which IRIDIA has expertise and state-of-the-art ACO algo as starting points (Scheduling - Blum?) |
||
** Collaboration with Marco Caserta on parallel ACO for Set Covering Problem |
** Collaboration with Marco Caserta on parallel ACO for Set Covering Problem |
||
+ | *** he doesn't use ACO for SCP, but I've helped him anyway to parallelize his own primal-dual algorithm |
||
+ | ** Collaboration with Daniele Catanzaro on parallel ACO for phylogeny reconstruction |
||
+ | *** Start from sequential ACO algorithm and implemented MPI variant |
||
+ | **** Sync |
||
+ | ***** Multicolony - fully-connected |
||
+ | ****** colony 0 identifies the best colony; best colony broadcast its bsf solution |
||
+ | ** Identify possible problems for which IRIDIA has expertise and state-of-the-art ACO algo as starting points (Scheduling: Blum, QAP: Thomas) |
||
+ | *** QAP: start from sequential MMASQAP and implement various MPI variants (in total we consider 72 algo) |
||
+ | **** Factor 1: Connection topology |
||
+ | ***** Multicolony - fully-connected |
||
+ | ****** colony 0 identifies the best colony; best colony broadcast its bsf solution |
||
+ | ****** colony 0 identifies the best colony and the worst colony; best colony send its bsf solution to worst colony |
||
+ | ***** Multicolony - ring |
||
+ | ****** unidirectional ring |
||
+ | ***** Multicolony - hypercube |
||
+ | ****** 3D hypercube |
||
+ | **** Factor 2: Communication schema |
||
+ | ***** Sync |
||
+ | ****** 1.x.10 (constant gap of 10 iterations) |
||
+ | ****** 2.9.10 |
||
+ | ****** 2.8.10 |
||
+ | ****** 2.7.10 |
||
+ | ****** 2.6.10 |
||
+ | ****** 3.9.10 |
||
+ | ****** 3.8.10 |
||
+ | ****** 3.7.10 |
||
+ | ****** 3.6.10 |
||
+ | **** Factor 3: Local Search |
||
+ | ***** 2-opt |
||
+ | ***** tabu search |
||
+ | ==Milestone III: Jul - Sep 2006== |
||
− | '''Milestone IV''': Oct - Dec 2006 |
||
+ | * Tech Report on TSP and QAP experiments |
||
+ | ** decision if and how to extend the paper for possible journal article |
||
+ | * Literature survey on parallel ACO algorithms (version 3) |
||
+ | * Acquire practical experience in implicit parallelization on ACO algorithms |
||
+ | ** Start from sequential ACOTSP and implement various OpenMP variants |
||
+ | *** Sync ( i.e. implicit barrier in for directives) |
||
+ | *** Async (i.e use of the nowait clause) |
||
+ | * ? Paper on "implicit vs explicit parallelization of ACOTSP" |
||
− | + | ==Milestone IV: Oct - Dec 2006== |
|
− | + | ==Milestone V: Jan - Mar 2007== |
|
− | + | ==Milestone VI: Apr - Jun 2007== |
|
− | * Write PhD thesis |
||
+ | |||
+ | ==Milestone VII: Jul - Sep 2007== |
||
+ | * Write PhD thesis |
||
= Goals = |
= Goals = |
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| '''Implicit parallelization of ACOTSP using OpenMP''' || - || - || - || Need a compiler |
| '''Implicit parallelization of ACOTSP using OpenMP''' || - || - || - || Need a compiler |
||
|- |
|- |
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− | | Parallel ACO survey |
+ | | Parallel ACO survey v3 || Jul 1, 2006 || Aug 31, 2006 || || |
|- |
|- |
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|} |
|} |
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{| border=1 cellspacing=0 cellpadding=2 |
{| border=1 cellspacing=0 cellpadding=2 |
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! Description !! Start date !! Deadline !! Completion date !! status !! Note |
! Description !! Start date !! Deadline !! Completion date !! status !! Note |
||
− | |- |
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− | | Disable the queues on the nodes r21, r24, r26, r27, r29, r31, r32, r33 || Mar 29 || || || done || |
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− | |- |
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− | | Generate 2 instances with portgen (pgua3162.tsp, pgub3162.tsp) and 2 instances with portcgen (pgca3162.tsp, pgcb3162.tsp) || || || || done || |
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− | |- |
||
− | | Solve the generated instances to optimum with concorde || Mar 29 || Mar 31 || || done || pgua3162.tsp --> 50121985<br>pgub3162.tsp --> 47500868<br>pgca3162.tsp --> 18547858<br>pgcb3162.tsp --> 21884136 |
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− | |- |
||
− | | Patch the algorithms in such a way that they use restart and communication schema (no-comm for n/2 iter and then exchange bsf every n/4 iter). || || || || || |
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− | |- |
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− | | ''' SEQUENTIAL ALGORITHMS''' || || || || || |
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− | |- |
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− | | PIR (no-restart) using 16 CPUs for 3600 sec on 6 instances || Mar 29 || Mar 31 || Apr 3 || done || |
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− | |- |
||
− | | SEQ (no-restart) on 1 CPU for 57600 sec on 6 instances || Apr 4 || Apr 11 || || done || |
||
− | |- |
||
− | | SEQ3 (restart) on 1 CPU for 57600 sec on 6 instances || Apr 4 || Apr 11 || || done || |
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− | |- |
||
− | | PIR3 (restart) using 16 CPUs for 3600 sec on 6 instances || Mar 31 || Apr 3 || Apr 4 || done || |
||
− | |- |
||
− | | '''SYNC ALGORITHMS''' || || || || || |
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− | |- |
||
− | | SR2 (no-restart) using 16 CPUs for 3600 sec on 6 instances || Apr 11 || Apr 13 || || running || should finish around Apr 13 @ 21:20 |
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− | |- |
||
− | | SRW2 (no-restart) using 16 CPUs for 3600 sec on 6 instances || Apr 14 || Apr 16 || || to be launched Apr 13 @ 22:00 || should finish around Apr 16 @ 10:00 |
||
− | |- |
||
− | | SR3 (restart) using 16 CPUs for 3600 sec on 6 instances || Apr 17 || Apr 19 || || to be launched Apr 16 @ 11:00 || should finish around Apr 18 @ 23:00 |
||
− | |- |
||
− | | SRW3 (restart) using 16 CPUs for 3600 sec on 6 instances || Apr 20 || Apr 22|| || to be launched Apr 19 @ 00:00 || should finish around Apr 21 @ 12:00 |
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− | |- |
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− | | '''ASYNC ALGORITHMS''' || || || || || |
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− | |- |
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− | | ACC3 (restart) using 16 CPUs for 3600 sec on 6 instances || Apr 23 || Apr 25 || || to be launched Apr 21 @ 15:00 || should finish around Apr 24 @ 03:00 |
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|- |
|- |
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|} |
|} |
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! Title !! Author !! Location !! Dates |
! Title !! Author !! Location !! Dates |
||
|- |
|- |
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+ | | IRIDIA Optimization meeting ||Ch. 4 of the book to present || || Apr 27, 2006 |
||
− | | || || || |
||
|- |
|- |
||
|} |
|} |
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− | |||
= Events participation = |
= Events participation = |
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Line 171: | Line 204: | ||
! Conference !! # papers !! paper received on !! review to submit before |
! Conference !! # papers !! paper received on !! review to submit before |
||
|- |
|- |
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+ | | |
||
− | | ANTS 2006 || 3 || March 28 || Apr 23 |
||
|- |
|- |
||
− | | WSC11 || 3-4 (estimation) || May/June 2006 (estimation) || 30 Jun 2006 |
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|} |
|} |
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− | |||
= IRIDIA chores = |
= IRIDIA chores = |
||
Line 184: | Line 215: | ||
| Update Dorigo website with Master, DEA, and PhD thesis data || Feb 2, 2006 || done |
| Update Dorigo website with Master, DEA, and PhD thesis data || Feb 2, 2006 || done |
||
|- |
|- |
||
+ | | Create a Wiki page with list of all the software we have for the Mac with #licenses and where they are installed || Apr 21, 2006 || |
||
− | | Update Dorigo website with new portoguese interview || Feb 19, 2006 || done |
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+ | |- |
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|} |
|} |
Latest revision as of 21:38, 6 July 2006
History (past work)
http://iridia.ulb.ac.be/wiki/index.php/History_Max_Manfrin
Plan (future work)
Milestone I: Jan - Mar 2006
- Acquire practical experience in explicit parallelization on ACO algorithms
- Start from sequential ACOTSP and implement various MPI variants
- Sync
- Multicolony - fully-connected
- colony 0 identifies the best colony; best colony broadcast its bsf solution
- colony 0 identifies the best colony and the worst colony; best colony send its bsf solution to worst colony
- Multicolony - ring
- unidirectional ring
- Multicolony - hypercube
- 3D hypercube
- Single colony, multi local search
- Multicolony - fully-connected
- Async
- Multicolony - completly-connected
- colony 0 identifies the best colony; best colony broadcast its bsf solution
- colony 0 identifies the best colony and the worst colony; best colony send its bsf solution to worst colony
- Multicolony - ring
- unidirectional ring
- Multicolony - hypercube
- 3D hypercube
- Multicolony - completly-connected
- Sync
- Start from sequential ACOTSP and implement various MPI variants
- Paper submission to ANTS 2006 of "explicit parallelization of ACOTSP"
- By end of March decision if and how to extend the paper for possible Journal article
- By end of March decision if proceed with MPI version of ILK-H + ACOTSP
- Find the sentence that explain what the PhD thesis is about (what is the contribution of this thesis?)
- 1. Parallelization of ACO on multi-core architectures ?
- 2. Parallelization of ACO on collection of interesting problems?
Milestone II: Apr - Jun 2006
- Development and empirical test of different communication schemes among colonies
The i.a.k identify how often we do communication among colonies. The law used to generate the periods is SQRT[(10)^(i+1)], so i = 1 --> T = 10 i = 2 --> T = 31 i = 3 --> T = 100 i = 4 --> T = 316 i = 5 --> T = 1000 i = 6 --> T = 3162 i = 7 --> T = 10000 i = 8 --> T = 31622 i = 9 --> T = 100000 The jth exchange happens at iteration T * (1 - 0.a^j)/(1 - 0.a) IF (int)[x_j - x_(j-1)] > k x_j = k OTHERWISE
- Start from sequential ACOTSP and implement various MPI variants
- Sync
- Multicolony - ring
- unidirectional ring
- 4.8.10
- 4.9.10
- 5.8.10
- 5.9.10
- 6.8.10
- 6.9.10
- 7.6.10
- 7.7.10
- unidirectional ring
- Multicolony - ring
- Sync
- Transfer the knowledge and experience on TSP to other problems
- Collaboration with Marco Caserta on parallel ACO for Set Covering Problem
- he doesn't use ACO for SCP, but I've helped him anyway to parallelize his own primal-dual algorithm
- Collaboration with Daniele Catanzaro on parallel ACO for phylogeny reconstruction
- Start from sequential ACO algorithm and implemented MPI variant
- Sync
- Multicolony - fully-connected
- colony 0 identifies the best colony; best colony broadcast its bsf solution
- Multicolony - fully-connected
- Sync
- Start from sequential ACO algorithm and implemented MPI variant
- Identify possible problems for which IRIDIA has expertise and state-of-the-art ACO algo as starting points (Scheduling: Blum, QAP: Thomas)
- QAP: start from sequential MMASQAP and implement various MPI variants (in total we consider 72 algo)
- Factor 1: Connection topology
- Multicolony - fully-connected
- colony 0 identifies the best colony; best colony broadcast its bsf solution
- colony 0 identifies the best colony and the worst colony; best colony send its bsf solution to worst colony
- Multicolony - ring
- unidirectional ring
- Multicolony - hypercube
- 3D hypercube
- Multicolony - fully-connected
- Factor 2: Communication schema
- Sync
- 1.x.10 (constant gap of 10 iterations)
- 2.9.10
- 2.8.10
- 2.7.10
- 2.6.10
- 3.9.10
- 3.8.10
- 3.7.10
- 3.6.10
- Sync
- Factor 3: Local Search
- 2-opt
- tabu search
- Factor 1: Connection topology
- QAP: start from sequential MMASQAP and implement various MPI variants (in total we consider 72 algo)
- Collaboration with Marco Caserta on parallel ACO for Set Covering Problem
Milestone III: Jul - Sep 2006
- Tech Report on TSP and QAP experiments
- decision if and how to extend the paper for possible journal article
- Literature survey on parallel ACO algorithms (version 3)
- Acquire practical experience in implicit parallelization on ACO algorithms
- Start from sequential ACOTSP and implement various OpenMP variants
- Sync ( i.e. implicit barrier in for directives)
- Async (i.e use of the nowait clause)
- Start from sequential ACOTSP and implement various OpenMP variants
- ? Paper on "implicit vs explicit parallelization of ACOTSP"
Milestone IV: Oct - Dec 2006
Milestone V: Jan - Mar 2007
Milestone VI: Apr - Jun 2007
Milestone VII: Jul - Sep 2007
- Write PhD thesis
Goals
- Investigate the effect of parallelization on Ant Colony Optimization algorithms
- Acquire practical experience in parallelization on ACO algorithms (both explicit and implicit parallelism)
- Implicit parallelism is the new trend (multi core CPUs), not much work has been done on them yet
Things to do
Description | Start date | Deadline | Time required | status |
---|---|---|---|---|
Study OpenMP | Jan 9, 2005 | ongoing process | In progress | |
Implicit parallelization of ACOTSP using OpenMP | - | - | - | Need a compiler |
Parallel ACO survey v3 | Jul 1, 2006 | Aug 31, 2006 |
Weekly planning
Description | Start date | Deadline | Completion date | status | Note |
---|
Seminars participation
Title | Author | Location | Dates |
---|---|---|---|
IRIDIA Optimization meeting | Ch. 4 of the book to present | Apr 27, 2006 |
Events participation
Event | Location | Dates |
---|---|---|
Papers to write
Title | Journal/Conference targeted | Submission deadline |
---|---|---|
A Survey of Parallel ACO algorithms | N.A. | N.A. |
Thread-level parallelization of ACOTSP | N.A. | N.A. |
Referee activities
International journals
Journal | # papers | paper received on | review to submit before |
---|---|---|---|
International conferences
Conference | # papers | paper received on | review to submit before |
---|---|---|---|
IRIDIA chores
Chore | assigned | status |
---|---|---|
Update Dorigo website with Master, DEA, and PhD thesis data | Feb 2, 2006 | done |
Create a Wiki page with list of all the software we have for the Mac with #licenses and where they are installed | Apr 21, 2006 |