Difference between revisions of "Conformational Switching"

Revision as of 15:19, 24 October 2014

1st December, 2014 : Submit final draft of Conformational Switching paper to Marco
22nd November, 2014 : Finish first draft of Conformational Switching paper
8th November, 2014 : Finalise results, create plots
1st November, 2014 : Finalise plan for experiments and collect preliminary data

Setting of the speed for experiments
- Result: self-assembly time distribution for each speed; use in experiments speed with lowest average time to completion + 2 std. dev.
Test to verify role of seed
- Passive components, no seed
- Passive components, AND seed

Run each experiment till self-assembly of one target structure using passive components AND seed
- Use different speeds starting from lowest speed = when components start to move and increment speed by 25 till target structure breaks.

Assembly of one target structure (Data to be collected: number of individual components, number of compatible substructures, number of incompatible substructures, number of targets)
- All components are seeds
- Passive components, no seed
- Passive components, AND seed

Assembly of two target structures (Data to be collected: number of individual components, number of compatible substructures, number of incompatible substructures, number of targets)
- All components are seeds
- Passive components, no seed
- Passive components, AND seed

Meeeting 1 whiteboard capture

Meeeting 2 whiteboard capture

@@ Line 18: / Line 18: @@
 === Particulars of experiments (10 trials each) ===
 * Run each experiment till self-assembly of one target structure using passive components AND seed
+**  Use different speeds starting from lowest speed = when components start to move and increment speed by 25 till target structure breaks.
 * Assembly of one target structure (Data to be collected: number of individual components, number of compatible substructures, number of incompatible substructures, number of targets)