Difference between revisions of "Plan Max Manfrin"

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= Plan (future work) =
 
= Plan (future work) =
   
  +
== Milestone I: Jan - Mar 2006==
   
'''Parallelization of ACO algorithms'''
 
   
'''Milestone I''': Jan - Mar 2006
 
 
* Acquire practical experience in explicit parallelization on ACO algorithms
 
* Acquire practical experience in explicit parallelization on ACO algorithms
 
** Start from sequential ACOTSP and implement various MPI variants
 
** Start from sequential ACOTSP and implement various MPI variants
 
*** Sync
 
*** Sync
**** Multicolony - completly-connected
+
**** Multicolony - fully-connected
***** each colony identifies the best bsf and grab it
+
***** colony 0 identifies the best colony; best colony broadcast its bsf solution
***** the colony with the worst bsf grab the best bsf
+
***** colony 0 identifies the best colony and the worst colony; best colony send its bsf solution to worst colony
 
**** Multicolony - ring
 
**** Multicolony - ring
  +
***** unidirectional ring
 
**** Multicolony - hypercube
 
**** Multicolony - hypercube
  +
***** 3D hypercube
 
**** Single colony, multi local search
 
**** Single colony, multi local search
 
*** Async
 
*** Async
 
**** Multicolony - completly-connected
 
**** Multicolony - completly-connected
***** each colony identifies the best bsf and grab it
+
***** colony 0 identifies the best colony; best colony broadcast its bsf solution
***** the colony with the worst bsf grab the best bsf
+
***** colony 0 identifies the best colony and the worst colony; best colony send its bsf solution to worst colony
 
**** Multicolony - ring
 
**** Multicolony - ring
  +
***** unidirectional ring
 
**** Multicolony - hypercube
 
**** Multicolony - hypercube
  +
***** 3D hypercube
**** Single colony, multi local search
 
 
* Paper submission to ANTS 2006 of "explicit parallelization of ACOTSP"
 
* Paper submission to ANTS 2006 of "explicit parallelization of ACOTSP"
 
* By end of March decision if and how to extend the paper for possible Journal article
 
* By end of March decision if and how to extend the paper for possible Journal article
 
* By end of March decision if proceed with MPI version of ILK-H + ACOTSP
 
* By end of March decision if proceed with MPI version of ILK-H + ACOTSP
* By end of March find the sentence that explain what the PhD thesis is about (what is the contribution of this thesis?)
+
* Find the sentence that explain what the PhD thesis is about (what is the contribution of this thesis?)
 
** 1. Parallelization of ACO on multi-core architectures ?
 
** 1. Parallelization of ACO on multi-core architectures ?
 
** 2. Parallelization of ACO on collection of interesting problems?
 
** 2. Parallelization of ACO on collection of interesting problems?
   
   
'''Milestone II''': Apr - Jun 2006
+
==Milestone II: Apr - Jun 2006==
* ? Evolve practical experience in explicit parallelization on ACO algorithms
 
** ? Start from sequential ILK-H and parallelize it with MPI, calling it within parallel ACOTSP
 
* Acquire practical experience in implicit parallelization on ACO algorithms
 
** Start from sequential ACOTSP and implement various OpenMP variants
 
*** Sync ( i.e. implicit barrier in for directives)
 
*** Async (i.e use of the nowait clause)
 
* Paper on "implicit vs explicit parallelization of ACOTSP"
 
* ? Paper on "hybridization of parallel ACOTSP and ILK-H"
 
   
   
  +
* Development and empirical test of different communication schemes among colonies
'''Milestone III''': Jul - Sep 2006
 
  +
<pre>
  +
The i.a.k identify how often we do communication among colonies.
  +
  +
The law used to generate the periods is SQRT[(10)^(i+1)], so
  +
i = 1 --> T = 10
  +
i = 2 --> T = 31
  +
i = 3 --> T = 100
  +
i = 4 --> T = 316
  +
i = 5 --> T = 1000
  +
i = 6 --> T = 3162
  +
i = 7 --> T = 10000
  +
i = 8 --> T = 31622
  +
i = 9 --> T = 100000
  +
  +
The jth exchange happens at iteration
  +
  +
  +
T * (1 - 0.a^j)/(1 - 0.a) IF (int)[x_j - x_(j-1)] > k
  +
x_j =
  +
k OTHERWISE
  +
</pre>
  +
* Start from sequential ACOTSP and implement various MPI variants
  +
** Sync
  +
*** Multicolony - ring
  +
**** unidirectional ring
  +
***** 4.8.10
  +
***** 4.9.10
  +
***** 5.8.10
  +
***** 5.9.10
  +
***** 6.8.10
  +
***** 6.9.10
  +
***** 7.6.10
  +
***** 7.7.10
 
* Transfer the knowledge and experience on TSP to other problems
 
* Transfer the knowledge and experience on TSP to other problems
** Identify possible problems for which IRIDIA has expertise and state-of-the-art ACO algo as starting points (Scheduling - Blum?)
 
 
** Collaboration with Marco Caserta on parallel ACO for Set Covering Problem
 
** Collaboration with Marco Caserta on parallel ACO for Set Covering Problem
  +
*** he doesn't use ACO for SCP, but I've helped him anyway to parallelize his own primal-dual algorithm
  +
** Collaboration with Daniele Catanzaro on parallel ACO for phylogeny reconstruction
  +
*** Start from sequential ACO algorithm and implemented MPI variant
  +
**** Sync
  +
***** Multicolony - fully-connected
  +
****** colony 0 identifies the best colony; best colony broadcast its bsf solution
  +
** Identify possible problems for which IRIDIA has expertise and state-of-the-art ACO algo as starting points (Scheduling: Blum, QAP: Thomas)
  +
*** QAP: start from sequential MMASQAP and implement various MPI variants (in total we consider 72 algo)
  +
**** Factor 1: Connection topology
  +
***** Multicolony - fully-connected
  +
****** colony 0 identifies the best colony; best colony broadcast its bsf solution
  +
****** colony 0 identifies the best colony and the worst colony; best colony send its bsf solution to worst colony
  +
***** Multicolony - ring
  +
****** unidirectional ring
  +
***** Multicolony - hypercube
  +
****** 3D hypercube
  +
**** Factor 2: Communication schema
  +
***** Sync
  +
****** 1.x.10 (constant gap of 10 iterations)
  +
****** 2.9.10
  +
****** 2.8.10
  +
****** 2.7.10
  +
****** 2.6.10
  +
****** 3.9.10
  +
****** 3.8.10
  +
****** 3.7.10
  +
****** 3.6.10
  +
**** Factor 3: Local Search
  +
***** 2-opt
  +
***** tabu search
   
  +
==Milestone III: Jul - Sep 2006==
   
'''Milestone IV''': Oct - Dec 2006
 
   
  +
* Tech Report on TSP and QAP experiments
  +
** decision if and how to extend the paper for possible journal article
  +
* Literature survey on parallel ACO algorithms (version 3)
  +
* Acquire practical experience in implicit parallelization on ACO algorithms
  +
** Start from sequential ACOTSP and implement various OpenMP variants
  +
*** Sync ( i.e. implicit barrier in for directives)
  +
*** Async (i.e use of the nowait clause)
  +
* ? Paper on "implicit vs explicit parallelization of ACOTSP"
   
'''Milestone V''': Jan - Mar 2007
+
==Milestone IV: Oct - Dec 2006==
   
   
'''Milestone VI''': Apr - Jun 2007
+
==Milestone V: Jan - Mar 2007==
   
   
'''Milestone VII''': Jul - Sep 2007
+
==Milestone VI: Apr - Jun 2007==
* Write PhD thesis
 
   
  +
  +
==Milestone VII: Jul - Sep 2007==
  +
* Write PhD thesis
   
 
= Goals =
 
= Goals =
Line 78: Line 144:
 
| '''Implicit parallelization of ACOTSP using OpenMP''' || - || - || - || Need a compiler
 
| '''Implicit parallelization of ACOTSP using OpenMP''' || - || - || - || Need a compiler
 
|-
 
|-
  +
| Parallel ACO survey v3 || Jul 1, 2006 || Aug 31, 2006 || ||
  +
|-
 
|}
 
|}
   
Line 85: Line 153:
 
{| border=1 cellspacing=0 cellpadding=2
 
{| border=1 cellspacing=0 cellpadding=2
 
! Description !! Start date !! Deadline !! Completion date !! status !! Note
 
! Description !! Start date !! Deadline !! Completion date !! status !! Note
|-
 
| Disable the queues on the nodes r21, r24, r26, r27, r29, r31, r32, r33 || Mar 29 || || || done ||
 
|-
 
| Generate 2 instances with portgen (pgua3162.tsp, pgub3162.tsp) and 2 instances with portcgen (pgca3162.tsp, pgcb3162.tsp) || || || || done ||
 
|-
 
| pgua3162.tsp --> 50121985<br>pgub3162.tsp --> 47500868<br>pgca3162.tsp --> 18547858<br>pgcb3162.tsp --> 21884136 || || || || || optimal values found with concorde
 
|-
 
| Patch the algorithms in such a way that they use restart and communication schema (no-comm for n/2 iter and then exchange bsf every n/4 iter). || || || || ||
 
|-
 
| ''' SEQUENTIAL ALGORITHMS''' || || || || ||
 
|-
 
| PIR (no-restart) using 16 CPUs for 3600 sec on 6 instances || Mar 29 || Mar 31 || || re-running || re-run pgca3162.tsp due to overflow
 
|-
 
| SEQ (no-restart) on 1 CPU for 57600 sec on 6 instances || Apr 4 || Apr 10 || || ||
 
|-
 
| SEQ3 (restart) on 1 CPU for 57600 sec on 6 instances || Apr 4 || Apr 10 || || ||
 
|-
 
| PIR3 (restart) using 16 CPUs for 3600 sec on 6 instances || Mar 31 || Apr 3 || || done || re-run pgca3162.tsp due to overflow
 
|-
 
| '''SYNC ALGORITHMS''' || || || || ||
 
|-
 
| SRW2 (no-restart) using 16 CPUs for 3600 sec on 6 instances || Apr 11 || Apr 13 || || ||
 
|-
 
| SR2 (no-restart) using 16 CPUs for 3600 sec on 6 instances || Apr 14 || Apr 16 || || ||
 
|-
 
| SRW3 (restart) using 16 CPUs for 3600 sec on 6 instances || Apr 17 || Apr 19 || || ||
 
|-
 
| SR3 (restart) using 16 CPUs for 3600 sec on 6 instances || Apr 20 || Apr 22|| || ||
 
|-
 
| '''ASYNC ALGORITHMS''' || || || || ||
 
|-
 
| ACC3 (restart) using 16 CPUs for 3600 sec on 6 instances || Apr 23 || Apr 25 || || ||
 
 
|-
 
|-
 
|}
 
|}
Line 125: Line 161:
 
! Title !! Author !! Location !! Dates
 
! Title !! Author !! Location !! Dates
 
|-
 
|-
  +
| IRIDIA Optimization meeting ||Ch. 4 of the book to present || || Apr 27, 2006
| || || ||
 
 
|-
 
|-
 
|}
 
|}
 
   
 
= Events participation =
 
= Events participation =
Line 169: Line 204:
 
! Conference !! # papers !! paper received on !! review to submit before
 
! Conference !! # papers !! paper received on !! review to submit before
 
|-
 
|-
  +
|
| ANTS 2006 || 3 || March 28 || Apr 23
 
 
|-
 
|-
| WSC11 || 3-4 (estimation) || May/June 2006 (estimation) || 30 Jun 2006
 
 
|}
 
|}
 
   
 
= IRIDIA chores =
 
= IRIDIA chores =
Line 180: Line 213:
 
! Chore !! assigned !! status
 
! Chore !! assigned !! status
 
|-
 
|-
| Update Dorigo website with Master, DEA, and PhD thesis data || Feb 2, 2006 ||
+
| Update Dorigo website with Master, DEA, and PhD thesis data || Feb 2, 2006 || done
  +
|-
  +
| Create a Wiki page with list of all the software we have for the Mac with #licenses and where they are installed || Apr 21, 2006 ||
 
|-
 
|-
| Update Dorigo website with new portoguese interview || Feb 19, 2006 ||
 
 
|}
 
|}

Latest revision as of 21:38, 6 July 2006

History (past work)

http://iridia.ulb.ac.be/wiki/index.php/History_Max_Manfrin


Plan (future work)

Milestone I: Jan - Mar 2006

  • Acquire practical experience in explicit parallelization on ACO algorithms
    • Start from sequential ACOTSP and implement various MPI variants
      • Sync
        • Multicolony - fully-connected
          • colony 0 identifies the best colony; best colony broadcast its bsf solution
          • colony 0 identifies the best colony and the worst colony; best colony send its bsf solution to worst colony
        • Multicolony - ring
          • unidirectional ring
        • Multicolony - hypercube
          • 3D hypercube
        • Single colony, multi local search
      • Async
        • Multicolony - completly-connected
          • colony 0 identifies the best colony; best colony broadcast its bsf solution
          • colony 0 identifies the best colony and the worst colony; best colony send its bsf solution to worst colony
        • Multicolony - ring
          • unidirectional ring
        • Multicolony - hypercube
          • 3D hypercube
  • Paper submission to ANTS 2006 of "explicit parallelization of ACOTSP"
  • By end of March decision if and how to extend the paper for possible Journal article
  • By end of March decision if proceed with MPI version of ILK-H + ACOTSP
  • Find the sentence that explain what the PhD thesis is about (what is the contribution of this thesis?)
    • 1. Parallelization of ACO on multi-core architectures ?
    • 2. Parallelization of ACO on collection of interesting problems?


Milestone II: Apr - Jun 2006

  • Development and empirical test of different communication schemes among colonies
The i.a.k identify how often we do communication among colonies. 

The law used to generate the periods is SQRT[(10)^(i+1)], so
i = 1 --> T = 10
i = 2 --> T = 31
i = 3 --> T = 100
i = 4 --> T = 316
i = 5 --> T = 1000
i = 6 --> T = 3162
i = 7 --> T = 10000
i = 8 --> T = 31622
i = 9 --> T = 100000

The jth exchange happens at iteration


      T * (1 - 0.a^j)/(1 - 0.a)  IF (int)[x_j - x_(j-1)] > k
x_j = 
      k                          OTHERWISE
  • Start from sequential ACOTSP and implement various MPI variants
    • Sync
      • Multicolony - ring
        • unidirectional ring
          • 4.8.10
          • 4.9.10
          • 5.8.10
          • 5.9.10
          • 6.8.10
          • 6.9.10
          • 7.6.10
          • 7.7.10
  • Transfer the knowledge and experience on TSP to other problems
    • Collaboration with Marco Caserta on parallel ACO for Set Covering Problem
      • he doesn't use ACO for SCP, but I've helped him anyway to parallelize his own primal-dual algorithm
    • Collaboration with Daniele Catanzaro on parallel ACO for phylogeny reconstruction
      • Start from sequential ACO algorithm and implemented MPI variant
        • Sync
          • Multicolony - fully-connected
            • colony 0 identifies the best colony; best colony broadcast its bsf solution
    • Identify possible problems for which IRIDIA has expertise and state-of-the-art ACO algo as starting points (Scheduling: Blum, QAP: Thomas)
      • QAP: start from sequential MMASQAP and implement various MPI variants (in total we consider 72 algo)
        • Factor 1: Connection topology
          • Multicolony - fully-connected
            • colony 0 identifies the best colony; best colony broadcast its bsf solution
            • colony 0 identifies the best colony and the worst colony; best colony send its bsf solution to worst colony
          • Multicolony - ring
            • unidirectional ring
          • Multicolony - hypercube
            • 3D hypercube
        • Factor 2: Communication schema
          • Sync
            • 1.x.10 (constant gap of 10 iterations)
            • 2.9.10
            • 2.8.10
            • 2.7.10
            • 2.6.10
            • 3.9.10
            • 3.8.10
            • 3.7.10
            • 3.6.10
        • Factor 3: Local Search
          • 2-opt
          • tabu search

Milestone III: Jul - Sep 2006

  • Tech Report on TSP and QAP experiments
    • decision if and how to extend the paper for possible journal article
  • Literature survey on parallel ACO algorithms (version 3)
  • Acquire practical experience in implicit parallelization on ACO algorithms
    • Start from sequential ACOTSP and implement various OpenMP variants
      • Sync ( i.e. implicit barrier in for directives)
      • Async (i.e use of the nowait clause)
  • ? Paper on "implicit vs explicit parallelization of ACOTSP"

Milestone IV: Oct - Dec 2006

Milestone V: Jan - Mar 2007

Milestone VI: Apr - Jun 2007

Milestone VII: Jul - Sep 2007

  • Write PhD thesis

Goals

  • Investigate the effect of parallelization on Ant Colony Optimization algorithms
  • Acquire practical experience in parallelization on ACO algorithms (both explicit and implicit parallelism)
  • Implicit parallelism is the new trend (multi core CPUs), not much work has been done on them yet


Things to do

Description Start date Deadline Time required status
Study OpenMP Jan 9, 2005 ongoing process In progress
Implicit parallelization of ACOTSP using OpenMP - - - Need a compiler
Parallel ACO survey v3 Jul 1, 2006 Aug 31, 2006


Weekly planning

Description Start date Deadline Completion date status Note

Seminars participation

Title Author Location Dates
IRIDIA Optimization meeting Ch. 4 of the book to present Apr 27, 2006

Events participation

Event Location Dates


Papers to write

Title Journal/Conference targeted Submission deadline
A Survey of Parallel ACO algorithms N.A. N.A.
Thread-level parallelization of ACOTSP N.A. N.A.


Referee activities

International journals

Journal # papers paper received on review to submit before


International conferences

Conference # papers paper received on review to submit before

IRIDIA chores

Chore assigned status
Update Dorigo website with Master, DEA, and PhD thesis data Feb 2, 2006 done
Create a Wiki page with list of all the software we have for the Mac with #licenses and where they are installed Apr 21, 2006